Microscopy is the technical field of using microscopes to view objects and areas of objects that cannot be seen with the naked eye. There are three well-known branches of microscopy: optical, electron, and scanning probe microscopy, along with the emerging field of X-ray microscopy.
In optics, the refractive index of an optical medium is a dimensionless number that gives the indication of the light bending ability of that medium.
Total internal reflection (TIR) is the optical phenomenon in which waves arriving at the interface (boundary) from one medium to another are not refracted into the second ("external") medium, but completely reflected back into the first ("internal") medium. It occurs when the second medium has a higher wave speed than the first, and the waves are incident at a sufficiently oblique angle on the interface. For example, the water-to-air surface in a typical fish tank, when viewed obliquely from below, reflects the underwater scene like a mirror with no loss of brightness (Fig. 1).
Polarization is a property applying to transverse waves that specifies the geometrical orientation of the oscillations. In a transverse wave, the direction of the oscillation is perpendicular to the direction of motion of the wave. A simple example of a polarized transverse wave is vibrations traveling along a taut string (see image); for example, in a musical instrument like a guitar string. Depending on how the string is plucked, the vibrations can be in a vertical direction, horizontal direction, or at any angle perpendicular to the string. In contrast, in longitudinal waves, such as sound waves in a liquid or gas, the displacement of the particles in the oscillation is always in the direction of propagation, so these waves do not exhibit polarization. Transverse waves that exhibit polarization include electromagnetic waves such as light and radio waves, gravitational waves, and transverse sound waves in solids.
Birefringence is the optical property of a material having a refractive index that depends on the polarization and propagation direction of light. These optically anisotropic materials are said to be birefringent. The birefringence is often quantified as the maximum difference between refractive indices exhibited by the material. Crystals with non-cubic crystal structures are often birefringent, as are plastics under mechanical stress.
An optical prism is a transparent optical element with flat, polished surfaces that are designed to refract light. At least one surface must be angled — elements with two parallel surfaces are not prisms. The most familiar type of optical prism is the triangular prism, which has a triangular base and rectangular sides. Not all optical prisms are geometric prisms, and not all geometric prisms would count as an optical prism. Prisms can be made from any material that is transparent to the wavelengths for which they are designed. Typical materials include glass, acrylic and fluorite.
Optics is the branch of physics which involves the behavior and properties of light, including its interactions with matter and the construction of instruments that use or detect it. Optics usually describes the behavior of visible, ultraviolet, and infrared light. Because light is an electromagnetic wave, other forms of electromagnetic radiation such as X-rays, microwaves, and radio waves exhibit similar properties.
A total internal reflection fluorescence microscope (TIRFM) is a type of microscope with which a thin region of a specimen, usually less than 200 nanometers can be observed.
Polarimetry is the measurement and interpretation of the polarization of transverse waves, most notably electromagnetic waves, such as radio or light waves. Typically polarimetry is done on electromagnetic waves that have traveled through or have been reflected, refracted or diffracted by some material in order to characterize that object.
A Nicol prism is a type of polarizer, an optical device made from calcite crystal used to produce and analyse plane polarized light. It is made in such a way that it eliminates one of the rays by total internal reflection, i.e. the ordinary ray is eliminated and only the extraordinary ray is transmitted through the prism. It was the first type of polarizing prism, invented in 1828 by William Nicol (1770–1851) of Edinburgh. It consists of a rhombohedral crystal of Iceland spar that has been cut at an angle of 68° with respect to the crystal axis, cut again diagonally, and then rejoined as shown, using a layer of transparent Canada balsam as a glue.
A polarizer or polariser is an optical filter that lets light waves of a specific polarization pass through while blocking light waves of other polarizations. It can filter a beam of light of undefined or mixed polarization into a beam of well-defined polarization, that is polarized light. The common types of polarizers are linear polarizers and circular polarizers. Polarizers are used in many optical techniques and instruments, and polarizing filters find applications in photography and LCD technology. Polarizers can also be made for other types of electromagnetic waves besides visible light, such as radio waves, microwaves, and X-rays.
A Glan–Thompson prism is a type of polarizing prism similar to the Nicol and Glan–Foucault prisms.
A Glan–Foucault prism is a type of prism which is used as a polarizer. It is similar in construction to a Glan–Thompson prism, except that two right-angled calcite prisms are spaced with an air gap instead of being cemented together. Total internal reflection of p-polarized light at the air gap means that only s-polarized light is transmitted straight through the prism.
A Glan–Taylor prism is a type of prism which is used as a polarizer or polarizing beam splitter. It is one of the most common types of modern polarizing prism. It was first described by Archard and Taylor in 1948.
Differential interference contrast (DIC) microscopy, also known as Nomarski interference contrast (NIC) or Nomarski microscopy, is an optical microscopy technique used to enhance the contrast in unstained, transparent samples. DIC works on the principle of interferometry to gain information about the optical path length of the sample, to see otherwise invisible features. A relatively complex optical system produces an image with the object appearing black to white on a grey background. This image is similar to that obtained by phase contrast microscopy but without the bright diffraction halo. The technique was developed by Polish physicist Georges Nomarski in 1952.
A Nomarski prism is a modification of the Wollaston prism that is used in differential interference contrast microscopy. It is named after its inventor, Polish and naturalized-French physicist Georges Nomarski. Like the Wollaston prism, the Nomarski prism consists of two birefringent crystal wedges cemented together at the hypotenuse. One of the wedges is identical to a conventional Wollaston wedge and has the optical axis oriented parallel to the surface of the prism. The second wedge of the prism is modified by cutting the crystal so that the optical axis is oriented obliquely with respect to the flat surface of the prism. The Nomarski modification causes the light rays to come to a focal point outside the body of the prism, and allows greater flexibility so that when setting up the microscope the prism can be actively focused.
In optics, a dispersive prism is an optical prism that is used to disperse light, that is, to separate light into its spectral components. Different wavelengths (colors) of light will be deflected by the prism at different angles. This is a result of the prism material's index of refraction varying with wavelength (dispersion). Generally, longer wavelengths (red) undergo a smaller deviation than shorter wavelengths (blue). The dispersion of white light into colors by a prism led Sir Isaac Newton to conclude that white light consisted of a mixture of different colors.
The Sénarmont prism is a type of polariser. It is made from two prisms of a birefringent material such as calcite, usually cemented together. The Sénarmont prism is named after Henri Hureau de Sénarmont. It is similar to the Rochon and Wollaston prisms.
A polarization rotator is an optical device that rotates the polarization axis of a linearly polarized light beam by an angle of choice. Such devices can be based on the Faraday effect, on birefringence, or on total internal reflection. Rotators of linearly polarized light have found widespread applications in modern optics since laser beams tend to be linearly polarized and it is often necessary to rotate the original polarization to its orthogonal alternative.
Anisotropic terahertz microspectroscopy (ATM) is a spectroscopic technique in which molecular vibrations in an anisotropic material are probed with short pulses of terahertz radiation whose electric field is linearly polarized parallel to the surface of the material. The technique has been demonstrated in studies involving single crystal sucrose, fructose, oxalic acid, and molecular protein crystals in which the spatial orientation of molecular vibrations are of interest.
