Gene bank

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The active gene bank of the International Crops Research Institute for the Semi-Arid Tropics in Patancheru, India. ICRISAT active genebank.jpg
The active gene bank of the International Crops Research Institute for the Semi-Arid Tropics in Patancheru, India.

Gene banks are a type of biorepository that preserves genetic material. For plants, this is done by in vitro storage, freezing cuttings from the plant, or stocking the seeds (e.g. in a seedbank). For animals, this is done by the freezing of sperm and eggs in zoological freezers until further need. With corals, fragments are taken and stored in water tanks under controlled conditions. [1] Genetic material in a 'gene bank' is preserved in a variety of ways, such as freezing at -196 °C in liquid nitrogen, being placed in artificial ecosystems, or put in controlled nutrient media.

Contents

In plants, it is possible to thaw the material and propagate it. However, in animals, a living female is required for artificial insemination. While it is often difficult to use frozen animal sperm and eggs, there are many examples of it being done successfully.

In an effort to conserve agricultural biodiversity, gene banks are used to store and conserve the plant genetic resources of major crop plants and their crop wild relatives. There are many gene banks all over the world, with the Svalbard Global Seed Vault being considered the most famous one. [2] [3]

The database of the largest gene banks in the world can be queried via a common website, Genesys. A number of global gene banks are coordinated by the CGIAR Genebank Platform

Types of gene bank

Inside Svalbard Global Seed Vault Svalbard Global Seed Vault, inside the vault - panoramio.jpg
Inside Svalbard Global Seed Vault

Seed bank

A seed bank is where seeds of many different species of plants are stored at freezing temperatures so that we have a way of preserving genetic diversity for the future. The temperature depends on how long the seeds are kept frozen. Temperature for short term storage (3–5 years) is between 5 and 10 °C (41 and 50 °F). Temperature for medium term storage (10–15 years) is at 0 °C (32 °F). Temperature for long term storage (50 or more years) is between −18 and −20 °C (0 and −4 °F). Seeds can remain dormant for many years so there is no need to keep restocking. Other parts of a plant that can be stored in these banks are spores and pteridophytes. Tuber crops, a type of seedless plant, cannot be frozen and stored. It is also important that when seeds are stored, they have a constant low moisture content to keep them viable at freezing temperatures. Seeds with a high moisture content will perish. [4] The largest seed bank in the world is the Millennium Seed Bank housed at the Wellcome Trust Millennium Building (WTMB), located in the grounds of Wakehurst Place in West Sussex, near London.[ dubious ] [5] The world’s largest seed vault is the Svalbard Global Seed Vault. Located in Spitsbergen, Norway, this seed vault was made to preserve genetic diversity in case there would ever be extinction or loss of any and all plants. [3]

Beans stored at a seed vault Beans in hand, gene bank.jpg
Beans stored at a seed vault

In vitro bank

In this technique, buds, protocorm and meristematic cells are preserved through particular light and temperature arrangements in a nutrient medium, which is either a gel or in liquid form. This technique is used to preserve seedless plants and plants that reproduce asexually or that require preservation as clones such as commercial cultivars. [6]

Cryobank

In this technique, a seed or embryo is preserved at very low temperatures. It is usually preserved in liquid nitrogen at -196 °C. [7] By freezing the seeds or embryos at this temperature they can stay viable for at least a century. [4] This is helpful for the conservation of species facing extinction. [7] Cryobanks are utilized for the cryoconservation of animal genetic resources. [8] An example of one of the world’s largest animal cryobanks is the frozen zoo made by the San Diego Zoo, in San Diego California. [9] With animal cryobanks freezing embryos is preferred instead of the separate egg and sperm because the embryos are more resistant to the freezing process. [10]

USDA cryopreservation gene bank Cryopreservation USDA Gene Bank.jpg
USDA cryopreservation gene bank

Storage of pollen

The storage of pollen is where pollen grains are stored through a cryopreservation technique called vitrification. Vitrification is the prosses where pollen grains are frozen but no ice or ice crystals form. [8] The pollen, which is stored in liquid nitrogen, is kept at temperatures of -180 °C to -196 °C. The National Seed Storage Lab in Fort Collins, Colorado currently uses this technique to store pollen. [11] Pollen can also be freeze dried and stored at temperatures of 5 °C to -18 °C. [4] An important element that must be considered is the levels of moisture in the pollen. If the pollen grains have a low moisture content it helps increase the length of the pollen’s life. Low levels of moisture help the pollen freeze without creating ice or ice crystals, which helps preserve the life span of the pollen while it is being stored. [12] [13] Ideal levels of moisture content in the pollen depends on the type of plant. The pollen from different plant species can be put into two groups. One is Binucleate pollen, which has a thicker exine and the second is Trinucleate pollen, which has a thinner exine. Binucleate pollen has a higher lifespan when frozen at a low moisture level. Trinucleate pollen, however, has a lower lifespan when frozen at a low moisture level. [12] Some ways that scientists decrease moisture level is to expose the pollen to diluted salt solutions, silica gel, dry air, or treatment with vitrification solutions. [14]

Field gene bank

This is a method of sowing plants for the conservation of genes. For this purpose, an ecosystem is created artificially. Through this method, one can compare the differences among plants of different species and can study them in detail. It needs more land, adequate soil, weather, etc. Germplasm of important crops are conserved through this method. 42,000 varieties of rice are conserved in the Central Rice Research Institute in Orissa.[ citation needed ] [15]

Field gene bank in Malaysia Field gene bank of Garcinia mangostana.JPG
Field gene bank in Malaysia

See also

Related Research Articles

<span class="mw-page-title-main">Embryo</span> Multicellular diploid eukaryote in its earliest stage of development

An embryo is an initial stage of development of a multicellular organism. In organisms that reproduce sexually, embryonic development is the part of the life cycle that begins just after fertilization of the female egg cell by the male sperm cell. The resulting fusion of these two cells produces a single-celled zygote that undergoes many cell divisions that produce cells known as blastomeres. The blastomeres are arranged as a solid ball that when reaching a certain size, called a morula, takes in fluid to create a cavity called a blastocoel. The structure is then termed a blastula, or a blastocyst in mammals.

<span class="mw-page-title-main">Seed bank</span> Backup seed storage

A seed bank stores seeds to preserve genetic diversity; hence it is a type of gene bank. There are many reasons to store seeds. One is to preserve the genes that plant breeders need to increase yield, disease resistance, drought tolerance, nutritional quality, taste, etc. of crops. Another is to forestall loss of genetic diversity in rare or imperiled plant species in an effort to conserve biodiversity ex situ. Many plants that were used centuries ago by humans are used less frequently now; seed banks offer a way to preserve that historical and cultural value. Collections of seeds stored at constant low temperature and low moisture are guarded against loss of genetic resources that are otherwise maintained in situ or in field collections. These alternative "living" collections can be damaged by natural disasters, outbreaks of disease, or war. Seed banks are considered seed libraries, containing valuable information about evolved strategies to combat plant stress, and can be used to create genetically modified versions of existing seeds. The work of seed banks often span decades and even centuries. Most seed banks are publicly funded and seeds are usually available for research that benefits the public.

<i>Ex situ</i> conservation Preservation of plants or animals outside their natural habitats

Ex situ conservation literally means, "off-site conservation". It is the process of protecting an endangered species, variety or breed, of plant or animal outside its natural habitat; for example, by removing part of the population from a threatened habitat and placing it in a new location, an artificial environment which is similar to the natural habitat of the respective animal and within the care of humans, example are zoological parks and wildlife sanctuaries. The degree to which humans control or modify the natural dynamics of the managed population varies widely, and this may include alteration of living environments, reproductive patterns, access to resources, and protection from predation and mortality. Ex situ management can occur within or outside a species' natural geographic range. Individuals maintained ex situ exist outside an ecological niche. This means that they are not under the same selection pressures as wild populations, and they may undergo artificial selection if maintained ex situ for multiple generations.

Cryobiology is the branch of biology that studies the effects of low temperatures on living things within Earth's cryosphere or in science. The word cryobiology is derived from the Greek words κρῧος [kryos], "cold", βίος [bios], "life", and λόγος [logos], "word". In practice, cryobiology is the study of biological material or systems at temperatures below normal. Materials or systems studied may include proteins, cells, tissues, organs, or whole organisms. Temperatures may range from moderately hypothermic conditions to cryogenic temperatures.

<span class="mw-page-title-main">Recalcitrant seed</span> Plant seeds intolerant of drying or cold

Recalcitrant seeds are seeds that do not survive drying and freezing during ex situ conservation. By and large, these seeds cannot resist the effects of drying or temperatures less than 10 °C ; thus, they cannot be stored for long periods like orthodox seeds because they can lose their viability. Plants that produce recalcitrant seeds include avocado, mango, mangosteen, lychee, cocoa, rubber tree, some horticultural trees, aquatic plants such as Nymphaea caerulea, and several plants used in traditional medicine, such as species of Virola and Pentaclethra. Generally speaking, most tropical pioneer species have orthodox seeds but many climax species have recalcitrant or intermediate seeds.

<span class="mw-page-title-main">Germplasm</span>

Germplasm are genetic resources such as seeds, tissues, and DNA sequences that are maintained for the purpose of animal and plant breeding, conservation efforts, agriculture, and other research uses. These resources may take the form of seed collections stored in seed banks, trees growing in nurseries, animal breeding lines maintained in animal breeding programs or gene banks. Germplasm collections can range from collections of wild species to elite, domesticated breeding lines that have undergone extensive human selection. Germplasm collection is important for the maintenance of biological diversity, food security, and conservation efforts.

<span class="mw-page-title-main">Sperm bank</span> Facility that purchases, stores and sells human semen

A sperm bank, semen bank, or cryobank is a facility or enterprise which purchases, stores and sells human semen. The semen is produced and sold by men who are known as sperm donors. The sperm is purchased by or for other persons for the purpose of achieving a pregnancy or pregnancies other than by a sexual partner. Sperm sold by a sperm donor is known as donor sperm.

A cryoprotectant is a substance used to protect biological tissue from freezing damage. Arctic and Antarctic insects, fish and amphibians create cryoprotectants in their bodies to minimize freezing damage during cold winter periods. Cryoprotectants are also used to preserve living materials in the study of biology and to preserve food products.

<span class="mw-page-title-main">Svalbard Global Seed Vault</span> Globally accessible seed bank on Spitsbergen, Svalbard, Norway

The Svalbard Global Seed Vault is a secure backup facility for the world's crop diversity on the Norwegian island of Spitsbergen in the remote Arctic Svalbard archipelago. The Seed Vault provides long-term storage of duplicates of seeds conserved in genebanks around the world. This provides security of the world's food supply against the loss of seeds in genebanks due to mismanagement, accident, equipment failures, funding cuts, war, sabotage, disease and natural disasters. The Seed Vault is managed under terms spelled out in a tripartite agreement among the Norwegian government, the Crop Trust, and the Nordic Genetic Resource Center (NordGen).

<span class="mw-page-title-main">Crop Trust</span>

The Crop Trust, officially known as the Global Crop Diversity Trust, is an international nonprofit organization with a secretariat in Bonn, Germany. Its mission is to conserve and make available the world's crop diversity for food security.

<span class="mw-page-title-main">Oocyte cryopreservation</span> Procedure to preserve a womans eggs (oocytes)

Oocyte cryopreservation is a procedure to preserve a woman's eggs (oocytes). This technique has been used to enable women to postpone pregnancy to a later date – whether for medical or social reasons. Several studies have shown that most infertility problems are due to germ cell deterioration related to aging. The procedure intends that the woman may choose to have the eggs thawed, fertilized, and transferred to the uterus as embryos to facilitate a pregnancy in the future. The procedure's success rate varies depending on the age of the woman, with the odds being higher in younger, adult women.

Genetic erosion is a process where the limited gene pool of an endangered species diminishes even more when reproductive individuals die off before reproducing with others in their endangered low population. The term is sometimes used in a narrow sense, such as when describing the loss of particular alleles or genes, as well as being used more broadly, as when referring to the loss of a phenotype or whole species.

A frozen zoo is a storage facility in which genetic materials taken from animals are stored at very low temperatures (−196 °C) in tanks of liquid nitrogen. Material preserved in this way can be stored indefinitely and used for artificial insemination, in vitro fertilization, embryo transfer, and cloning. There are a few frozen zoos across the world that implement this technology for conservation efforts. Several different species have been introduced to this technology, including the Pyrenean ibex, Black-footed ferret, and potentially the white rhinoceros.

<span class="mw-page-title-main">Cryopreservation</span> Process to preserve biological matter

Cryopreservation or cryoconservation is a process where biological material - cells, tissues, or organs - are frozen to preserve the material for an extended period of time. At low temperatures any cell metabolism which might cause damage to the biological material in question is effectively stopped. Cryopreservation is an effective way to transport biological samples over long distances, store samples for prolonged periods of time, and create a bank of samples for users. Molecules, referred to as cryoprotective agents (CPAs), are added to reduce the osmotic shock and physical stresses cells undergo in the freezing process. Some cryoprotective agents used in research are inspired by plants and animals in nature that have unique cold tolerance to survive harsh winters, including: trees, wood frogs, and tardigrades.

Semen cryopreservation is a procedure to preserve sperm cells. Semen can be used successfully indefinitely after cryopreservation. It can be used for sperm donation where the recipient wants the treatment in a different time or place, or as a means of preserving fertility for men undergoing vasectomy or treatments that may compromise their fertility, such as chemotherapy, radiation therapy or surgery. It is also often used by trans women prior to medically transitioning in ways that affect fertility, such as feminizing hormone therapy and orchiectomies.

Cryopreservation of embryos is the process of preserving an embryo at sub-zero temperatures, generally at an embryogenesis stage corresponding to pre-implantation, that is, from fertilisation to the blastocyst stage.

A cryopreservation straw is a small storage device used for the cryogenic storage of liquid samples, often in a biobank or other collection of samples. Their most common application is for storage of sperm for in-vitro fertilization.

<span class="mw-page-title-main">Cryoconservation of animal genetic resources</span>

Cryoconservation of animal genetic resources is a strategy wherein samples of animal genetic materials are preserved cryogenically.

The Australian Grains Genebank (AGG) is a national center for storing genetic material for plant breeding and research. The Genebank is in a collaboration with the Australian Seed Bank Partnership on an Australian Crop Wild Relatives project. It is located at Grains Innovation Park, in Horsham, Victoria, Australia.

Plant cryopreservation is a genetic resource conservation strategy that allows plant material, such as seeds, pollen, shoot tips or dormant buds to be stored indefinitely in liquid nitrogen. After thawing, these genetic resources can be regenerated into plants and used on the field. While this cryopreservation conservation strategy can be used on all plants, it is often only used under certain circumstances: 1) crops with recalcitrant seeds e.g. avocado, coconut 2) seedless crops such as cultivated banana and plantains or 3) crops that are clonally propagated such as cassava, sweet potato.

References

  1. "青汁と口臭とサプリメントと運動". www.cdnn.info. Retrieved 1 March 2017.
  2. On practical and theoretical differences between a storage and a gene bank, see Nicole C. Karafyllis (ed.): Theorien der Lebendsammlung. Pflanzen, Mikroben und Tiere als Biofakte in Genbanken (in German), Freiburg: Karl Alber 2018 (Lebenswissenschaften im Dialog Vol. 25) ISBN   978-3-495-48975-8
  3. 1 2 Liu, Rita (15 April 2022). "Seed banks: the last line of defense against a threatening global food crisis". The Guardian. ISSN   0261-3077 . Retrieved 2 March 2023.
  4. 1 2 3 Babasaheb, Jige, Sandipan (December 2021). "'NEW TRENDS IN BIODIVERSITY CONSERVATION'". www.jetir.org. Retrieved 11 October 2023.{{cite web}}: CS1 maint: multiple names: authors list (link)
  5. Gosling, Rebecca (2 December 2020). "What is a seed bank, how does it work and why is it important?". Woodland Trust. Retrieved 11 October 2023.
  6. "In vitro bank". cropgenebank.sgrp.cgiar.org. Retrieved 20 April 2021.
  7. 1 2 "Cryo bank". cropgenebank.sgrp.cgiar.org. Retrieved 1 November 2023.
  8. 1 2 "Cryoconservation of Animal Genetic Resources" (PDF). Rep. Rome: Food and Agriculture Organization of the United Nations. FAO Animal Production and Health Guidelines No. 12. Print. 2012.
  9. Prisco, Jacopo (31 March 2022). "Back from the brink: How 'frozen zoos' could save dying species". CNN. Retrieved 1 November 2023.
  10. "The Frozen Zoo". 21 May 2010. Archived from the original on 21 May 2010. Retrieved 1 November 2023.{{cite web}}: CS1 maint: bot: original URL status unknown (link)
  11. Connor, Kristina F.; Towill, Leigh E. (1 January 1993). "Pollen-handling protocol and hydration/dehydration characteristics of pollen for application to long-term storage". Euphytica. 68 (1): 77–84. doi:10.1007/BF00024157. ISSN   1573-5060.
  12. 1 2 Janick, Jules (7 April 2010). Plant Breeding Reviews, Volume 13. John Wiley & Sons. ISBN   978-0-470-65004-2.
  13. Kartha (3 April 1985). Cryopreservation of Plant Cells and Organs. CRC Press. ISBN   978-0-8493-6102-9.
  14. Dinato, N. B.; Santos, I. R. I.; Vigna, B. B. Z.; Ferreira de Paula, A.; Favero, A. P. (2020). "PERSPECTIVE: Pollen Cryopreservation for Plant Breeding and Genetic Resources Conservation". Cryo Letters. 41 (3): 115–127. ISSN   0143-2044. PMID   33988640.
  15. "Field bank". cropgenebank.sgrp.cgiar.org. Retrieved 1 November 2023.