Hyphomicrobiales

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Hyphomicrobiales
Agrobacterium-tumefaciens.png
Agrobacterium (SEM image)
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Phylum: Pseudomonadota
Class: Alphaproteobacteria
Order: Hyphomicrobiales
Douglas 1957 (Approved Lists 1980)
Families [1]

See text

Synonyms [2]
  • RhizobialesKuykendall 2006

The Hyphomicrobiales (synonom Rhizobiales) are an order of Gram-negative Alphaproteobacteria.

The rhizobia, which fix nitrogen and are symbiotic with plant roots, appear in several different families. The four families Nitrobacteraceae , Hyphomicrobiaceae , Phyllobacteriaceae , and Rhizobiaceae contain at least several genera of nitrogen-fixing, legume-nodulating, microsymbiotic bacteria. Examples are the genera Bradyrhizobium and Rhizobium . Species of the Methylocystaceae are methanotrophs; they use methanol (CH3OH) or methane (CH4) as their sole energy and carbon sources. Other important genera are the human pathogens Bartonella and Brucella , as well as Agrobacterium (useful in genetic engineering).

Taxonomy

Accepted families

Unassigned Genera

The following genus has not been assigned to a family:

Provisional Taxa

These taxa have been published, but have not been validated according to the Bacteriological Code:

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature [7] and the phylogeny is based on whole-genome sequences. [2] [lower-alpha 1]

Natural genetic transformation

Natural genetic transformation has been reported in at least four Hyphomicrobiales species: Agrobacterium tumefaciens , [8] Methylobacterium organophilum , [9] Ensifer adhaerens , [10] and Bradyrhizobium japonicum . [11] Natural genetic transformation is a sexual process involving DNA transfer from one bacterial cell to another through the intervening medium, and the integration of the donor sequence into the recipient genome by homologous recombination.

See also

Notes

  1. Aestuariivirgaceae, Alsobacteraceae, Ancalomicrobiaceae, Lichenibacteriaceae, Lichenihabitantaceae, Rhabdaerophilaceae, and Segnochrobactraceae are not included in this phylogenetic tree.
  2. Phyllobacterium is separate from the rest of Phyllobacteriaceae.
  3. Prosthecomicrobium is separate from the rest of Hyphomicrobiaceae.

Related Research Articles

<span class="mw-page-title-main">Pseudomonadota</span> Phylum of Gram-negative bacteria

Pseudomonadota is a major phylum of Gram-negative bacteria. Currently, they are considered the predominant phylum within the realm of bacteria. They are naturally found as pathogenic and free-living (non-parasitic) genera. The phylum comprises six classes Acidithiobacilia, Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Hydrogenophilia, and Zetaproteobacteria. The Pseudomonadota are widely diverse, with differences in morphology, metabolic processes, relevance to humans, and ecological influence.

<span class="mw-page-title-main">Rhodospirillales</span> Order of bacteria

The Rhodospirillales are an order of Pseudomonadota.

<span class="mw-page-title-main">Rhizobiaceae</span> Family of bacteria

The Rhizobiaceae is a family of Pseudomonadota comprising multiple subgroups that enhance and hinder plant development. Some bacteria found in the family are used for plant nutrition and collectively make up the rhizobia. Other bacteria such as Agrobacterium tumefaciens and Rhizobium rhizogenes severely alter the development of plants in their ability to induce crown galls or hairy roots, respectively. The family has been of an interest to scientists for centuries in their ability to associate with plants and modify plant development. The Rhizobiaceae are, like all Pseudomonadota, Gram-negative. They are aerobic, and the cells are usually rod-shaped. Many species of the Rhizobiaceae are diazotrophs which are able to fix nitrogen and are symbiotic with plant roots.

<span class="mw-page-title-main">Caulobacteraceae</span> Family of bacteria

Caulobacteraceae is a family of Pseudomonadota within the alpha subgroup. Like all Pseudomonadota, the Caulobacteraceae are gram-negative. Caulobacteraceae includes the genera Asticcacaulis, Brevundimonas, Phenylobacterium and Caulobacter.

<span class="mw-page-title-main">Caulobacterales</span> Family of bacteria

Caulobacterales is an order of gram-negative pseudomonadota within the alpha subgroup.

<span class="mw-page-title-main">Rhodocyclales</span> Order of bacteria

The Rhodocyclales are an order of the class Betaproteobacteria in the phylum Pseudomonadota ("Proteobacteria"). Following a major reclassification of the class in 2017, the previously monofamilial order was split into three families:

<span class="mw-page-title-main">Brucellaceae</span> Family of bacteria

The Brucellaceae are a family of the Gram-negative Hyphomicrobiales. They are named after Sir David Bruce, a Scottish microbiologist. They are aerobic chemoorganotrophes. The family comprises pathogen and soil bacteria

The Holosporaceae are a family of bacteria. The member Holospora is an intracellular parasite found in the unicellular protozoa Paramecium.

<span class="mw-page-title-main">Alteromonadales</span> Order of bacteria

The Alteromonadales are an order of Pseudomonadota. Although they have been treated as a single family, the Alteromonadaceae, they were divided into eight by Ivanova et al. in 2004. The cells are straight or curved rods. They are motile by the use of a single flagellum. Most of the species are marine.

<i>Comamonas</i> Genus of bacteria

Comamonas is a genus of bacteria in the phylum Pseudomonadota. Like all Pseudomonadota, they are Gram-negative bacteria. Comamonas species are aerobic organisms and motile using bipolar or polar tufts of one to five flagella. Comamonas testosteroni and Comamonas kerstersii have been found to cause infections in people.

Zavarzinia compransoris is a Gram-negative soil bacterium that comprises the only current member of the genus Zavarzinia. It is named after the Russian microbiologist Georgi Alexandrovich Zavarzin. Zavarzinia is motile by using a polar flagellum. The cells are curved rod-shaped.

Aminobacter aminovorans is a Gram-negative soil bacteria.

Afipia carboxidovorans is a Gram-negative soil bacterium. It is aerobic, the cells are rod-shaped.

Devosia is a genus of Gram-negative soil bacteria. It is named after the Belgian microbiologist Paul De Vos. They are motile by flagella, the cells are rod-shaped.

Methylobacillus is a genus of Gram-negative methylotrophic bacteria. The cells are rod-shaped.

<i>Ensifer</i> (bacterium) Genus of bacteria

Ensifer is a genus of nitrogen-fixing bacteria (rhizobia), three of which have been sequenced.

In taxonomy, Ahrensia is a genus of the Hyphomicrobiales. Ahrensia is named after the German microbiologist R. Ahrens. The cells are rod-shaped and motile. They are strictly aerobic.

The Sphingomonadales are an order of the Alphaproteobacteria.

Methylocella tundrae is a species of bacterium. It is notable for oxidising methane. Its cells are aerobic, Gram-negative, non-motile, dinitrogen-fixing rods. Strain T4T is the type strain.

The Marinilabiliaceae are a family of bacteria.

References

  1. Parker CT, Garrity GM (1 January 2003). Parker CT, Garrity GM (eds.). "Taxonomic Abstract for the families: Mabikibacteraceae". The NamesforLife Abstracts. NamesforLife, LLC. doi:10.1601/tx.30673 (inactive 2024-04-17).{{cite journal}}: CS1 maint: DOI inactive as of April 2024 (link)
  2. 1 2 Hördt A, López MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, et al. (2020). "Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria". Frontiers in Microbiology. 11: 468. doi: 10.3389/fmicb.2020.00468 . PMC   7179689 . PMID   32373076.
  3. Dong L, Han MX, Wang D, Liu F, Asem MD, Jiao JY, Xiao M, Salam N, Li WJ (2019). "Flaviflagellibacter deserti gen. nov., sp. nov., a novel member of the order Rhizobiales isolated from a desert soil". Antonie van Leeuwenhoek. 112 (6): 947–954. doi:10.1007/s10482-019-01228-0. PMID   30637538. S2CID   58006833.
  4. La Scola B, Barrassi L, Raoult D (2004). "A novel alpha-Proteobacterium, Nordella oligomobilis gen. nov., sp. nov., isolated by using amoebal co-cultures". Res Microbiol. 155 (1): 47–51. doi: 10.1016/j.resmic.2003.09.012 . PMID   14759708.
  5. 1 2 3 Liu YL, Meng D, Wang F, Gong XF, Gu PF, Fan XY, Du ZJ, Zou JD, Li Q (2021). "Propylenella binzhouense gen. nov., sp. nov. isolated from activated sludge, and proposal of Propylenellaceae fam. nov". Antonie van Leeuwenhoek. 114 (3): 225–233. doi:10.1007/s10482-020-01514-2. PMID   33400070. S2CID   230665484.
  6. Sislak CD (2013). Novel Thermophilic Bacteria Isolated From Marine Hydrothermal Vents (MSc). Portland State University. doi: 10.15760/etd.1485 . 1486.
  7. Euzéby JP, Parte AC. "Hyphomicrobiales". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved May 15, 2021.
  8. Demanèche S, Kay E, Gourbière F, Simonet P (June 2001). "Natural transformation of Pseudomonas fluorescens and Agrobacterium tumefaciens in soil". Applied and Environmental Microbiology. 67 (6): 2617–21. Bibcode:2001ApEnM..67.2617D. doi:10.1128/AEM.67.6.2617-2621.2001. PMC   92915 . PMID   11375171.
  9. O'Connor M, Wopat A, Hanson RS (January 1977). "Genetic transformation in Methylobacterium organophilum". Journal of General Microbiology. 98 (1): 265–72. doi: 10.1099/00221287-98-1-265 . PMID   401866.
  10. Zuniga-Soto E, Mullins E, Dedicova B (2015). "Ensifer-mediated transformation: an efficient non-Agrobacterium protocol for the genetic modification of rice". SpringerPlus. 4: 600. doi: 10.1186/s40064-015-1369-9 . PMC   4628045 . PMID   26543735.
  11. Raina JL, Modi VV (August 1972). "Deoxyribonucleate binding and transformation in Rhizobium jpaonicum". Journal of Bacteriology. 111 (2): 356–60. doi:10.1128/JB.111.2.356-360.1972. PMC   251290 . PMID   4538250.

Further reading