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The Ulvophyceae or ulvophytes are a class of green algae, distinguished mainly on the basis of ultrastructural morphology, life cycle and molecular phylogenetic data. The sea lettuce, Ulva, belongs here. Other well-known members include Caulerpa, Codium, Acetabularia, Cladophora, Trentepohlia and Monostroma.
The Lophophorata or Tentaculata are a Lophotrochozoan clade consisting of the Brachiozoa and the Bryozoa. They have a lophophore. Molecular phylogenetic analyses suggest that lophophorates are protostomes, but on morphological grounds they have been assessed as deuterostomes. Fossil finds of the "tommotiid" Wufengella suggest that they evolved from worm-like animals that resembled annelids.
Molecular phylogenetics is the branch of phylogeny that analyzes genetic, hereditary molecular differences, predominantly in DNA sequences, to gain information on an organism's evolutionary relationships. From these analyses, it is possible to determine the processes by which diversity among species has been achieved. The result of a molecular phylogenetic analysis is expressed in a phylogenetic tree. Molecular phylogenetics is one aspect of molecular systematics, a broader term that also includes the use of molecular data in taxonomy and biogeography.
Ecdysozoa is a group of protostome animals, including Arthropoda, Nematoda, and several smaller phyla. The grouping of these animal phyla into a single clade was first proposed by Eernisse et al. (1992) based on a phylogenetic analysis of 141 morphological characters of ultrastructural and embryological phenotypes. This clade, that is, a group consisting of a common ancestor and all its descendants, was formally named by Aguinaldo et al. in 1997, based mainly on phylogenetic trees constructed using 18S ribosomal RNA genes.
Eulipotyphla is an order of mammals suggested by molecular methods of phylogenetic reconstruction, which includes the laurasiatherian members of the now-invalid polyphyletic order Lipotyphla, but not the afrotherian members.
The molecular clock is a figurative term for a technique that uses the mutation rate of biomolecules to deduce the time in prehistory when two or more life forms diverged. The biomolecular data used for such calculations are usually nucleotide sequences for DNA, RNA, or amino acid sequences for proteins.
The Muroidea are a large superfamily of rodents, including mice, rats, voles, hamsters, lemmings, gerbils, and many other relatives. Although the Muroidea originated in Eurasia, they occupy a vast variety of habitats on every continent except Antarctica. Some authorities have placed all members of this group into a single family, Muridae, due to difficulties in determining how the subfamilies are related to one another. Many of the families within the Muroidea superfamily have more variations between the families than between the different clades. A possible explanation for the variations in rodents is because of the location of these rodents; these changes could have been due to radiation or the overall environment they migrated to or originated in. The following taxonomy is based on recent well-supported molecular phylogenies.
Euarchontoglires, synonymous with Supraprimates, is a clade and a superorder of mammals, the living members of which belong to one of the five following groups: rodents, lagomorphs, treeshrews, primates, and colugos.
Myocastor is a genus of rodent that contains the living nutria, as well as several fossil species.
Internal transcribed spacer (ITS) is the spacer DNA situated between the small-subunit ribosomal RNA (rRNA) and large-subunit rRNA genes in the chromosome or the corresponding transcribed region in the polycistronic rRNA precursor transcript.
Neodiapsida is a clade, or major branch, of the reptilian family tree, typically defined as including all diapsids apart from some early primitive types known as the araeoscelidians. Modern reptiles and birds belong to the neodiapsid subclade Sauria.
In phylogenetics, basal is the direction of the base of a rooted phylogenetic tree or cladogram. The term may be more strictly applied only to nodes adjacent to the root, or more loosely applied to nodes regarded as being close to the root. Note that extant taxa that lie on branches connecting directly to the root are not more closely related to the root than any other extant taxa.
The Iberian shrew or Lagranja shrew is a species of mammal in the family Soricidae. It is found in Portugal and Spain.
The tribe Bovini or wild cattle are medium to massive bovines that are native to Eurasia, North America, and Africa. These include the enigmatic, antelope-like saola, the African and Asiatic buffalos, and a clade that consists of bison and the wild cattle of the genus Bos. Not only are they the largest members of the subfamily Bovinae, they are the largest species of their family Bovidae. The largest species is the gaur, weighing up to 1,500 kg (3,300 lb).
Mirandornithes is a clade that consists of flamingos and grebes. Many scholars use the term Phoenicopterimorphae for the superorder containing flamingoes and grebes.
Aequornithes, or core water birds, are defined as "the least inclusive clade containing Gaviidae and Phalacrocoracidae".
The Genistoids are one of the major radiations in the plant family Fabaceae. Members of this phylogenetic clade are primarily found in the Southern hemisphere. Some genera are pollinated by birds. The genistoid clade is consistently resolved as monophyletic in molecular phylogenetic analyses. It is estimated to have arisen 56.4 ± 0.2 million years ago. A node-based definition for the genistoids is: "the MRCA of Poecilanthe parviflora and Lupinus argenteus." One morphological synapomorphy has been tentatively identified: production of quinolizidine alkaloids. Some genera also accumulate pyrrolizidine. A new genus, to be segregated from Clathrotropis, has also been proposed to occupy an undetermined position within the genistoid clade.
Archelosauria is a clade grouping turtles and archosaurs and their fossil relatives, to the exclusion of lepidosaurs. The majority of phylogenetic analyses based on molecular data have supported a sister-group relationship between turtles and archosaurs. On the other hand, Archelosauria had not been historically supported by most morphological analyses, which have instead found turtles to either be descendants of parareptiles, early-diverging diapsids outside of Sauria, or close relatives of lepidosaurs within the clade Ankylopoda. Some recent morphological analyses have also found support for Archelosauria.
Americhelydia is a clade of turtles that consists of sea turtles, snapping turtles, the Central American river turtle and mud turtles, supported by several lines of molecular work. Prior to these studies some morphological and developmental work have considered sea turtles to be basal members of Cryptodira and kinosternids related to the trionychians in the clade Trionychoidea. Americhelydia and Testudinoidea, both clades within Durocryptodira, split a part during the early Cretaceous.
Echimyini is a tribe of echimyid rodents, proposed in 2016, and containing 13 extant genera: all of the tree rats Echimys, Phyllomys, Makalata, Pattonomys, Toromys, Diplomys, Santamartamys, and Isothrix, the long recognized dactylomines Dactylomys, Olallamys, and Kannabateomys, and the enigmatic and previously classified as eumysopines Lonchothrix and Mesomys. All these spiny rats genera are arboreal. Worth of note, the arboreal genus Callistomys – the painted-tree rat – does not belong to the tribe Echimyini. Because it is phylogenetically closer to Myocastor, Hoplomys, Proechimys, and Thrichomys than to the above-mentioned Echimyini genera, it is classified in the tribe Myocastorini.
References
- ↑ Martin Kostka; Ivan Cepicka; Vladimir Hampl & Jaroslav Flegr (2007). "Phylogenetic position of Karotomorpha and paraphyly of Proteromonadidae" (PDF). Molecular Phylogenetics and Evolution . 43 (3): 1167–1170. doi:10.1016/j.ympev.2006.11.002. PMID 17187998.
- ↑ Nishi A, Ishida K, Endoh H (June 2005). "Reevaluation of the evolutionary position of opalinids based on 18S rDNA, and alpha- and beta-tubulin gene phylogenies". Journal of Molecular Evolution . 60 (6): 695–705. Bibcode:2005JMolE..60..695N. doi:10.1007/s00239-004-0149-x. PMID 15931497.
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