Bacteroidales

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Bacteroidales
Bacteroides biacutis 01.jpg
Bacteroides biacutis anaerobically cultured in blood agar medium
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Phylum: Bacteroidota
Class: Bacteroidia
Krieg 2012 [1]
Order: Bacteroidales
Krieg 2012 [2]
Families [3] [4] [5]
Synonyms
  • Bacteroidia:
    • "Bacteroidetia" Cavalier-Smith 2020
  • Bacteroidales:
    • Marinilabiliales Wu et al. 2016

Bacteroidales is an order of bacteria. [2] [3] Notably it includes the genera Prevotella and Bacteroides , which are commonly found in the human gut microbiota.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature [3] and National Center for Biotechnology Information (NCBI). [4]

Whole-genome based phylogeny [6] 16S rRNA based LTP_12_2021 [7] [8] [9] GTDB 07-RS207 by Genome Taxonomy Database [10] [11] [12]
Bacteroidales

P3

"Ca. Limimorpha" Gilroy et al. 2021

Lentimicrobiaceae Sun et al. 2016

" Bacteroides periocalifornicus "

Tenuifilaceae Podosokorskaya et al. 2021

Williamwhitmaniaceae Pikuta et al. 2017

UBA932

Acetobacteroides Su et al. 2014

Rikenellaceae Krieg et al. 2012

Salinivirgaceae Ben Hania et al. 2017

Prolixibacteraceae Huang et al. 2014 (incl. Draconibacteriaceae)

Marinifilaceae Iino et al. 2014 (incl. Balneicellaceae; Odoribacteraceae)

Marinilabiliaceae Ludwig et al. 2012

Paludibacteraceae Ormerod et al. 2022 [13]

Porphyromonadaceae Krieg 2012

Tannerellaceae Ormerod et al. 2022

"Azobacteroidaceae"

Dysgonomonadaceae García-López et al. 2020

"Ca. Gallibacteroides" Gilroy et al. 2021

"Coprobacteraceae"

"Ca. Caccoplasma" Gilroy et al. 2021

Barnesiellaceae García-López et al. 2020

Muribaculaceae Lagkouvardos et al. 2019 (incl. "Homeothermaceae")

Bacteroidaceae Pribram 1933 (incl. Prevotellaceae)

Notes

    Related Research Articles

    <span class="mw-page-title-main">Bacteroidota</span> Phylum of Gram-negative bacteria

    The phylum Bacteroidota is composed of three large classes of Gram-negative, nonsporeforming, anaerobic or aerobic, and rod-shaped bacteria that are widely distributed in the environment, including in soil, sediments, and sea water, as well as in the guts and on the skin of animals.

    <span class="mw-page-title-main">Desulfovibrionales</span> Order of bacteria

    Desulfovibrionales are a taxonomic order of bacteria belonging to the phylum Thermodesulfobacteriota, with four families. They are Gram-negative. The majority are sulfate-reducing, with the exception of Lawsonia and Bilophila. All members of this order are obligately anaerobic. Most species are mesophilic, but some are moderate thermophiles.

    The Desulfuromonadales are an order within the Thermodesulfobacteriota. Various members of the Desulfomonadales are capable of anaerobic respiration utilizing a variety of compounds as electron acceptors, including sulfur, Mn(IV), Fe(III), nitrate, Co(III), Tc(VII), U(VI) and trichloroacetic acid

    The Syntrophobacterales are an order of Thermodesulfobacteriota. All genera are strictly anaerobic. Many of the family Syntrophobacteraceae are sulfate-reducing. Some species are motile by using one polar flagellum.

    The Myxococcota are a phylum of bacteria known as the fruiting gliding bacteria. All species of this group are Gram-negative. They are predominantly aerobic genera that release myxospores in unfavorable environments.

    Prevotellaceae is a family of bacteria from the order Bacteroidales. As a member of the phylum Bacteroidota, its species are gram negative – meaning their outer cell wall contains lipopolysaccharides. Since they are anaerobes, members of Prevotellaceae can live in areas where there is little to no oxygen – such as the guts of mammals.

    <span class="mw-page-title-main">Flavobacteriales</span> Order of bacteria

    The order Flavobacteriales comprises several families of environmental bacteria.

    The Sphingobacteriales is an order of environmental bacteria.

    The family Saprospiraceae is composed of environmental bacteria. The members of this family are important to the breakdown of complex organic compounds in the environment.

    <span class="mw-page-title-main">Acidobacteriaceae</span> Family of bacteria

    The Acidobacteriaceae are a family of Acidobacteriota.

    Bergey's Manual of Systematic Bacteriology is the main resource for determining the identity of prokaryotic organisms, emphasizing bacterial species, using every characterizing aspect.

    <span class="mw-page-title-main">Sphingobacteria (phylum)</span> Phylum of bacteria

    The FCB group is a superphylum of bacteria named after the main member phyla Fibrobacterota, Chlorobiota, and Bacteroidota. The members are considered to form a clade due to a number of conserved signature indels.

    The Marinilabiliaceae are a family of bacteria.

    Saprospirales is an order of bacteria in the phylum Bacteroidota.

    Planctomycetia is a class of aquatic bacteria.

    <i>Gemmatimonas</i> Genus of bacteria

    Gemmatimonas is a Gram-negative, rod-shaped, motile and non-spore-forming genus of bacteria from the family of Gemmatimonaceae.

    Pelagicoccus is a Gram-negative genus of bacteria from the family of Puniceicoccaceae.

    The Opitutales is an order in the phylum Verrucomicrobiota.

    The Opitutaceae are a Gram-negative and chemoheterotrophic order of the domain Bacteria. Opitutaceae bacteria were isolated from soil and coastal marine springs.

    <span class="mw-page-title-main">Acidobacteriia</span> Class of bacteria

    The "Acidobacteriia" is a class of Acidobacteriota.

    References

    1. ↑ Krieg NR (2010). "Class I. Bacteroidia class. nov.". In Krieg NR, Staley JT, Brown DR, Hedlund BP, Paster BJ, Ward NL, Ludwig W, Whitman WB (eds.). Bergey's Manual of Systematic Bacteriology. Vol. 4 (2nd ed.). New York, NY: Springer. p. 25.
    2. 1 2 Krieg NR (2010). "Order I. Bacteroidales ord. nov.". In Krieg NR, Staley JT, Brown DR, Hedlund BP, Paster BJ, Ward NL, Ludwig W, Whitman WB (eds.). Bergey's Manual of Systematic Bacteriology. Vol. 4 (2nd ed.). New York, NY: Springer. p. 25.
    3. 1 2 3 Euzéby JP, Parte AC. "Bacteroidia". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 25, 2021.
    4. 1 2 Sayers; et al. "Bacteroidia". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2016-03-20.
    5. ↑ Parker, Charles Thomas; Garrity, George M (19 October 2017). Parker, Charles Thomas; Garrity, George M (eds.). "Williamwhitmaniaceae Pikuta et al. 2017 emend. García-López et al. 2019". NamesforLife. doi:10.1601/tx.30875 (inactive 2024-04-17).{{cite journal}}: CS1 maint: DOI inactive as of April 2024 (link)
    6. ↑ García-López M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Göker M (2019). "Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes". Front Microbiol. 10: 2083. doi: 10.3389/fmicb.2019.02083 . PMC   6767994 . PMID   31608019.
    7. ↑ "The LTP" . Retrieved 23 February 2021.
    8. ↑ "LTP_all tree in newick format" . Retrieved 23 February 2021.
    9. ↑ "LTP_12_2021 Release Notes" (PDF). Retrieved 23 February 2021.
    10. ↑ "GTDB release 07-RS207". Genome Taxonomy Database . Retrieved 20 June 2022.
    11. ↑ "ar53_r207.sp_label". Genome Taxonomy Database . Retrieved 20 June 2022.
    12. ↑ "Taxon History". Genome Taxonomy Database . Retrieved 20 June 2022.
    13. ↑ Ormerod, Kate L.; Wood, David L. A.; Lachner, Nancy; Gellatly, Shaan L.; Daly, Joshua N.; Parsons, Jeremy D.; Dal'Molin, Cristiana G. O.; Palfreyman, Robin W.; Nielsen, Lars K.; Cooper, Matthew A.; Morrison, Mark; Hansbro, Philip M.; Hugenholtz, Philip (7 July 2016). "Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals". Microbiome. 4 (1): 36. doi: 10.1186/s40168-016-0181-2 . PMC   4936053 . PMID   27388460.


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