Thermodesulfobacteriota

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Thermodesulfobacteriota
Dvulgaris micrograph.JPG
Desulfovibrio vulgaris
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Phylum: Thermodesulfobacteriota
Garrity & Holt 2021 [1]
Classes [2]
Synonyms [2]
  • "Ca. Dadabacteria" Hug et al. 2016
  • "Desulfobacterota" Waite et al. 2020
  • "Thermodesulfobacteraeota" Oren et al. 2015
  • Thermodesulfobacteria Garrity and Holt 2002
  • "Thermodesulfobacteriota" Whitman et al. 2018

The Thermodesulfobacteriota are a phylum [3] of thermophilic [4] sulfate-reducing bacteria.

Contents

A pathogenic intracellular thermodesulfobacteriote has recently been identified. [5]

Phylogeny

The phylogeny is based on phylogenomic analysis:

Waite et al. 2020 [2] 120 single copy marker proteins based GTDB 08-RS214 [6] [7] [8]
Thermodesulfobacteriota
Deferrisomatia

Deferrisomatales

"Dadabacteria"

Desulfuromonadia

Geobacterales

Desulfuromonadales

Desulfomonilia

Desulfomonilales

Syntrophia

Syntrophales

Syntrophorhabdia

Syntrophorhabdales

Dissulfuribacteria

Dissulfuribacterales

Thermodesulfobacteria

Thermodesulfobacteriales

Desulfobulbia

Desulfobulbales

"Desulfofervidia"

"Desulfofervidales"

Desulfovibrionia

Desulfovibrionales

Syntrophobacteria

Syntrophobacterales

Desulfobaccia

Desulfobaccales

Desulfarculia

"Adiutricales"

Desulfarculales

Desulfobacteria

Desulfatiglandales

Desulfobacterales

"Deltaproteobacteria"

"Lambdaproteobacteria" {SAR324}

Bdellovibrionota

Oligoflexia

Bacteriovoracia

Bdellovibrionia

"Lernaellota" (FEN-1099)

"Binatota"

"Binatia" [Desulfobacterota B]

Myxococcota

Myxococcia

"Bradymonadia"

Polyangiia

"Deferrisomatota"

Deferrisomatia [Desulfobacterota C]

"Deferrimicrobiota"

"Deferrimicrobiia" [Desulfobacterota E]

"Anaeroferrophilia"

"Modulibacteria"

"Methylomirabilota"

"Schekmanbacteria"

"Tectomicrobia"

Nitrospinota

Nitrospirota

Desulfobacterota F

Desulfuromonadia

"Desulfobacterota"

"Zymogenia"

Desulfomonilia

Syntrophia

Dissulfuribacteria

"Thermodesulfobacteriia"

Desulfobulbia

"Desulfofervidia"

Desulfovibrionia

Desulfobaccia

Desulfarculia

Syntrophobacteria

"Desulfatiglandia"

Desulfobacteria

"Aquificida"
Desulfobacterota G

Syntrophorhabdia

"Acidulodesulfobacteriota"

Acidulodesulfobacteriia [SZUA-79]

"Dadabacteria" [Desulfobacterota D]

"Calescamantes"

"Thermosulfidibacterota"

Chrysiogenota

Deferribacterota

Aquificota

Campylobacterota

"Leptospirillaeota"

Pseudomonadota

See also

Related Research Articles

The Aquificota phylum is a diverse collection of bacteria that live in harsh environmental settings. The name Aquificota was given to this phylum based on an early genus identified within this group, Aquifex, which is able to produce water by oxidizing hydrogen. They have been found in springs, pools, and oceans. They are autotrophs, and are the primary carbon fixers in their environments. These bacteria are Gram-negative, non-spore-forming rods. They are true bacteria as opposed to the other inhabitants of extreme environments, the Archaea.

<span class="mw-page-title-main">Acidobacteriota</span> Phylum of bacteria

Acidobacteriota is a phylum of Gram-negative bacteria. Its members are physiologically diverse and ubiquitous, especially in soils, but are under-represented in culture.

The Geobacteraceae are a family within the Thermodesulfobacteriota.

<span class="mw-page-title-main">Desulfovibrionales</span> Order of bacteria

Desulfovibrionales are a taxonomic order of bacteria belonging to the phylum Thermodesulfobacteriota, with four families. They are Gram-negative. The majority are sulfate-reducing, with the exception of Lawsonia and Bilophila. All members of this order are obligately anaerobic. Most species are mesophilic, but some are moderate thermophiles.

The Syntrophobacterales are an order of Thermodesulfobacteriota. All genera are strictly anaerobic. Many of the family Syntrophobacteraceae are sulfate-reducing. Some species are motile by using one polar flagellum.

Desulfovibrionaceae is a family of bacteria belonging to the phylum Thermodesulfobacteriota.

The Thermotogota are a phylum of the domain Bacteria. The phylum Thermotogota is composed of Gram-negative staining, anaerobic, and mostly thermophilic and hyperthermophilic bacteria.

The Myxococcota are a phylum of bacteria known as the fruiting gliding bacteria. All species of this group are Gram-negative. They are predominantly aerobic genera that release myxospores in unfavorable environments.

The Gemmatimonadota are a phylum of bacteria established in 2003. The phylum contains two classes Gemmatimonadetes and Longimicrobia.

Chloracidobacterium is a genus of the Acidobacteriota. It is currently assigned to the family Acidobacteriaceae, but phylogenetic evidence suggests that it belongs in Blastocatellia.

The phylum Elusimicrobiota, previously known as "Termite Group 1", has been shown to be widespread in different ecosystems like marine environment, sewage sludge, contaminated sites and soils, and toxic wastes. The high abundance of Elusimicrobiota representatives is only seen for the lineage of symbionts found in termites and ants.

Armatimonadota is a phylum of gram-negative bacteria.

Caldithrix is a genus of thermophilic and anaerobic bacteria, currently assigned to its own phylum.

Desulfatirhabdium is a bacteria genus from the order Desulfobacterales.

Coprothermobacterota is a phylum of nonmotile, rod-shaped bacteria.

Bdellovibrionota is a phylum of bacteria.

The Ignavibacteriales are an order of obligately anaerobic, non-photosynthetic bacteria that are closely related to the green sulfur bacteria.

The Desulfocapsaceae are a family of Thermodesulfobacteriota.

The Bryobacteraceae are a family of Acidobacteriota.

The Holophagae is a class of Acidobacteriota.

References

  1. Oren A, Garrity GM (2021). "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol. 71 (10): 5056. doi: 10.1099/ijsem.0.005056 . PMID   34694987.
  2. 1 2 3 Waite DW, Chuvochina M, Pelikan C, Parks DH, Yilmaz P, Wagner M, Loy A, Naganuma T, Nakai R, Whitman WB, Hahn MW, Kuever J, Hugenholtz P. (2020). "Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities". Int J Syst Evol Microbiol. 70 (11): 5972–6016. doi: 10.1099/ijsem.0.004213 . PMID   33151140.
  3. Vick TJ, Dodsworth JA, Costa KC, Shock EL, Hedlund BP (March 2010). "Microbiology and geochemistry of Little Hot Creek, a hot spring environment in the Long Valley Caldera". Geobiology. 8 (2): 140–54. Bibcode:2010Gbio....8..140V. doi:10.1111/j.1472-4669.2009.00228.x. PMID   20002204. S2CID   9610725.
  4. Jeanthon C, L'Haridon S, Cueff V, Banta A, Reysenbach AL, Prieur D (May 2002). "Thermodesulfobacterium hydrogeniphilum sp. nov., a thermophilic, chemolithoautotrophic, sulfate-reducing bacterium isolated from a deep-sea hydrothermal vent at Guaymas Basin, and emendation of the genus Thermodesulfobacterium". Int. J. Syst. Evol. Microbiol. 52 (Pt 3): 765–72. doi:10.1099/ijs.0.02025-0. PMID   12054236.
  5. Schmitz-Esser S, Haferkamp I, Knab S, et al. (September 2008). "Lawsonia intracellularis contains a gene encoding a functional rickettsia-like ATP/ADP translocase for host exploitation". J. Bacteriol. 190 (17): 5746–52. doi:10.1128/JB.00391-08. PMC   2519521 . PMID   18606736.
  6. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  7. "bac120_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  8. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.