Elusimicrobiota

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Elusimicrobiota
Scientific classification OOjs UI icon edit-ltr.svg
Domain: Bacteria
Phylum: Elusimicrobiota
Geissinger et al. 2021 [1]
Classes
Synonyms
  • "Elusimicrobaeota" Oren et al. 2015
  • "Elusimicrobia" Geissinger et al. 2009
  • "Elusimicrobiota" Whitman et al. 2018
  • Candidate phylum TG1

The phylum Elusimicrobiota, previously known as "Termite Group 1", has been shown to be widespread in different ecosystems like marine environment, sewage sludge, contaminated sites and soils, and toxic wastes. The high abundance of Elusimicrobiota representatives is only seen for the lineage of symbionts found in termites and ants. [2]

Contents

The first organism to be cultured was Elusimicrobium minutum ; however, two other species have been partially described and placed in a separate class, known as Endomicrobia. [3]

Phylogeny

16S rRNA based LTP_12_2021 [4] [5] [6] 120 single copy marker proteins based GTDB 08-RS214 [7] [8] [9]
Elusimicrobiales

Elusimicrobium minutum

Elusimicrobiaceae
Endomicrobiales

Endomicrobium proavitum

Endomicrobiaceae
Elusimicrobiales

"Ca. Avelusimicrobium excrementipullorum"

Elusimicrobium minutum

Elusimicrobiaceae
Endomicrobiales
Endomicrobium

E. proavitum

"Ca. E. trichonymphae"

Endomicrobiaceae

Taxonomy

The currently accepted taxonomy is based solemnly on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [10] and National Center for Biotechnology Information (NCBI) [11]

See also

Related Research Articles

<span class="mw-page-title-main">Spirochaete</span> Phylum of bacteria

A spirochaete or spirochete is a member of the phylum Spirochaetota, which contains distinctive diderm (double-membrane) gram-negative bacteria, most of which have long, helically coiled cells. Spirochaetes are chemoheterotrophic in nature, with lengths between 3 and 500 μm and diameters around 0.09 to at least 3 μm.

The Aquificota phylum is a diverse collection of bacteria that live in harsh environmental settings. The name Aquificota was given to this phylum based on an early genus identified within this group, Aquifex, which is able to produce water by oxidizing hydrogen. They have been found in springs, pools, and oceans. They are autotrophs, and are the primary carbon fixers in their environments. These bacteria are Gram-negative, non-spore-forming rods. They are true bacteria as opposed to the other inhabitants of extreme environments, the Archaea.

<span class="mw-page-title-main">Deinococcota</span> Phylum of Gram-negative bacteria

Deinococcota is a phylum of bacteria with a single class, Deinococci, that are highly resistant to environmental hazards, also known as extremophiles. These bacteria have thick cell walls that give them gram-positive stains, but they include a second membrane and so are closer in structure to those of gram-negative bacteria.

<span class="mw-page-title-main">Verrucomicrobiota</span> Phylum of bacteria

Verrucomicrobiota is a phylum of Gram-negative bacteria that contains only a few described species. The species identified have been isolated from fresh water, marine and soil environments and human faeces. A number of as-yet uncultivated species have been identified in association with eukaryotic hosts including extrusive explosive ectosymbionts of protists and endosymbionts of nematodes residing in their gametes.

Mollicutes is a class of bacteria distinguished by the absence of a cell wall. The word "Mollicutes" is derived from the Latin mollis, and cutis. Individuals are very small, typically only 0.2–0.3 μm in size and have a very small genome size. They vary in form, although most have sterols that make the cell membrane somewhat more rigid. Many are able to move about through gliding, but members of the genus Spiroplasma are helical and move by twisting. The best-known genus in the Mollicutes is Mycoplasma. Colonies show the typical "fried-egg" appearance.

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The Thermotogota are a phylum of the domain Bacteria. The phylum Thermotogota is composed of Gram-negative staining, anaerobic, and mostly thermophilic and hyperthermophilic bacteria.

Fibrobacterota is a small bacterial phylum which includes many of the major rumen bacteria, allowing for the degradation of plant-based cellulose in ruminant animals. Members of this phylum were categorized in other phyla. The genus Fibrobacter was removed from the genus Bacteroides in 1988.

<i>Thermotoga</i> Genus of bacteria

Thermotoga is a genus of the phylum Thermotogota. Members of Thermotoga are hyperthermophilic bacteria whose cell is wrapped in a unique sheath-like outer membrane, called a "toga".

<span class="mw-page-title-main">Campylobacterota</span> Class of bacteria

Campylobacterota are a phylum of bacteria. All species of this phylum are Gram-negative.

The Gemmatimonadota are a phylum of bacteria established in 2003. The phylum contains two classes Gemmatimonadetes and Longimicrobia.

<span class="mw-page-title-main">Methanomicrobia</span> Class of archaea

In the taxonomy of microorganisms, the Methanomicrobia are a class of the Euryarchaeota.

The Synergistota is a phylum of anaerobic bacteria that show Gram-negative staining and have rod/vibrioid cell shape. Although Synergistota have a diderm cell envelope, the genes for various proteins involved in lipopolysaccharides biosynthesis have not yet been detected in Synergistota, indicating that they may have an atypical outer cell envelope. The Synergistota inhabit a majority of anaerobic environments including animal gastrointestinal tracts, soil, oil wells, and wastewater treatment plants and they are also present in sites of human diseases such as cysts, abscesses, and areas of periodontal disease. Due to their presence at illness related sites, the Synergistota are suggested to be opportunistic pathogens but they can also be found in healthy individuals in the microbiome of the umbilicus and in normal vaginal flora. Species within this phylum have also been implicated in periodontal disease, gastrointestinal infections and soft tissue infections. Other species from this phylum have been identified as significant contributors in the degradation of sludge for production of biogas in anaerobic digesters and are potential candidates for use in renewable energy production through their production of hydrogen gas. All of the known Synergistota species and genera are presently part of a single class (Synergistia), order (Synergistiales), and family (Synergistaceae).

Pyrsonympha is a genus of Excavata.

Elusimicrobium minutum is an ultramicrobacterium and first accepted member to be cultured of a major bacterial lineage previously known only as candidate phylum Termite Gut 1 (TG1), which has accordingly been renamed phylum Elusimicrobiota. It was isolated in the laboratory of Andreas Brune at the Max Planck Institute for Terrestrial Microbiology, from the scarab beetle. It is a mesophilic, obligately anaerobic ultramicrobacterium with a gram-negative cell envelope. Cells are typically rod shaped, but cultures are pleomorphic in all growth phases. The isolate grows heterotrophically on sugars and ferments D-galactose, D-glucose, D-fructose, D-glucosamine, and N-acetyl-D-glucosamine to acetate, ethanol, hydrogen, and alanine as major products but only if amino acids are present in the medium

Nitrospirota is a phylum of bacteria. It includes multiple genera, such as Nitrospira, the largest. The first member of this phylum, Nitrospira marina, was discovered in 1985. The second member, Nitrospira moscoviensis, was discovered in 1995.

Lentisphaerota is a phylum of bacteria closely related to Chlamydiota and Verrucomicrobiota.

Armatimonadota is a phylum of gram-negative bacteria.

The Rhodothermales are an order of bacteria.

Bdellovibrionota is a phylum of bacteria.

References

  1. Oren A, Garrity GM (2021). "Valid publication of the names of forty-two phyla of prokaryotes". Int J Syst Evol Microbiol. 71 (10): 5056. doi: 10.1099/ijsem.0.005056 . PMID   34694987.
  2. Herlemann, D.P.R.; Geissinger, O.; Brune, A. (2007). "The Termite Group I phylum is highly diverse and widespread in the environment". Appl. Environ. Microbiol. 73 (20): 6682–6685. Bibcode:2007ApEnM..73.6682H. doi:10.1128/AEM.00712-07. PMC   2075069 . PMID   17704269.
  3. Stingl, U.; et al. (2005). "Endomicrobia: Cytoplasmic Symbionts of Termite Gut Protozoa Form a Separate Phylum of Prokaryotes". Appl. Environ. Microbiol. 71 (3): 1473–1479. Bibcode:2005ApEnM..71.1473S. doi:10.1128/AEM.71.3.1473-1479.2005. PMC   1065190 . PMID   15746350.
  4. "The LTP" . Retrieved 23 February 2021.
  5. "LTP_all tree in newick format" . Retrieved 23 February 2021.
  6. "LTP_12_2021 Release Notes" (PDF). Retrieved 23 February 2021.
  7. "GTDB release 08-RS214". Genome Taxonomy Database . Retrieved 10 May 2023.
  8. "bac120_r214.sp_label". Genome Taxonomy Database . Retrieved 10 May 2023.
  9. "Taxon History". Genome Taxonomy Database . Retrieved 10 May 2023.
  10. J.P. Euzéby. "Elusimicrobia". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2011-11-17.
  11. Sayers; et al. "Elusimicrobia". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2011-06-05.