Sedolisin

Last updated
S8/S53 domain
PDB 1ga6 EBI.jpg
Structure of pseudomonalisin ( PDB: 1GA6 )
Identifiers
SymbolPeptidase_S8
Pfam PF00082
InterPro IPR000209
PROSITE PDOC00125
CATH 1GA6
SCOP2 1GA6 / SCOPe / SUPFAM
CDD cd07477
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary

The sedolisin (MEROPS S53) family of peptidases are a family of serine proteases structurally related to the subtilisin (S8) family. Well-known members of this family include sedolisin ("pseudomonalisin") found in Pseudomonas bacteria, xanthomonalisin ("sedolisin-B"), physarolisin as well as animal tripeptidyl peptidase I. It is also known as sedolysin or serine-carboxyl peptidase. This group of enzymes contains a variation on the catalytic triad: unlike S8 which uses Ser-His-Asp, this group runs on Ser-Glu-Asp, with an additional acidic residue Asp in the oxyanion hole. [1]

Contents

Their optimal pH is around 3. Most members of the family are produced as a precursor protein with N-terminal (InterPro :  IPR015366 ) and sometimes C-terminal peptides that need to be cleaved off. [2]

Family members

Sedolisin

Sedolisin
Identifiers
EC no. 3.4.21.100
CAS no. 848318-58-1
Databases
IntEnz IntEnz view
BRENDA BRENDA entry
ExPASy NiceZyme view
KEGG KEGG entry
MetaCyc metabolic pathway
PRIAM profile
PDB structures RCSB PDB PDBe PDBsum
Search
PMC articles
PubMed articles
NCBI proteins

Sedolisin ( P42790 , pseudomonapepsin, sedolysin) is a serine protease. It is secreted by Pseudomonas sp. 101. It performs hydrolysis of the B chain of insulin at -Glu13-Ala-, -Leu15-Tyr- and -Phe25-Tyr-, and angiotensin I at -Tyr4-Ile-. A good synthetic substrate is Lys-Pro-Ile-Glu-Phe-Phe(NO2)-Arg-Leu. [3] [4] [5] [6]

Xanthomonalisin

Xanthomonalisin
Identifiers
EC no. 3.4.21.101
CAS no. 113356-29-9
Databases
IntEnz IntEnz view
BRENDA BRENDA entry
ExPASy NiceZyme view
KEGG KEGG entry
MetaCyc metabolic pathway
PRIAM profile
PDB structures RCSB PDB PDBe PDBsum
Search
PMC articles
PubMed articles
NCBI proteins

Xanthomonalisin ( Q60106 ) is found in Xanthomonas bacteria. It cleaves caesin and clots milk. [7] [8]

Physarolisin

Physarolisin
Identifiers
EC no. 3.4.21.103
CAS no. 94949-28-7
Databases
IntEnz IntEnz view
BRENDA BRENDA entry
ExPASy NiceZyme view
KEGG KEGG entry
MetaCyc metabolic pathway
PRIAM profile
PDB structures RCSB PDB PDBe PDBsum
Search
PMC articles
PubMed articles
NCBI proteins

Physarolisin ( Q8MZS4 , physaropepsin) is a milk-clotting enzyme. It shows preferential cleavage of Gly8-Ser in B chain of insulin most rapidly, followed by Leu11!Val, Cys(SO3H)19-Gly and Phe24-Phe. [9] [10] [11] [12] [13]

It is special in that it is cold-adapted. It was discovered in the slime mold Physarum flavicomum . Similar proteins (InterPro :  IPR017001 ) are also found in archaea. [14]

Related Research Articles

In biology and biochemistry, protease inhibitors, or antiproteases, are molecules that inhibit the function of proteases. Many naturally occurring protease inhibitors are proteins.

<span class="mw-page-title-main">Papain</span> Widely used enzyme extracted from papayas

Papain, also known as papaya proteinase I, is a cysteine protease enzyme present in papaya and mountain papaya. It is the namesake member of the papain-like protease family.

<span class="mw-page-title-main">Cysteine protease</span> Class of enzymes

Cysteine proteases, also known as thiol proteases, are hydrolase enzymes that degrade proteins. These proteases share a common catalytic mechanism that involves a nucleophilic cysteine thiol in a catalytic triad or dyad.

Aspergillopepsin I is an enzyme. This enzyme catalyses the following chemical reaction

<span class="mw-page-title-main">Proteinase K</span> Broad-spectrum serine protease

In molecular biology, Proteinase K is a broad-spectrum serine protease. The enzyme was discovered in 1974 in extracts of the fungus Parengyodontium album. Proteinase K is able to digest hair (keratin), hence, the name "Proteinase K". The predominant site of cleavage is the peptide bond adjacent to the carboxyl group of aliphatic and aromatic amino acids with blocked alpha amino groups. It is commonly used for its broad specificity. This enzyme belongs to Peptidase family S8 (subtilisin). The molecular weight of Proteinase K is 28,900 daltons.

<span class="mw-page-title-main">Tripeptidyl peptidase I</span> Protein-coding gene in the species Homo sapiens

Tripeptidyl-peptidase 1, also known as Lysosomal pepstatin-insensitive protease, is an enzyme that in humans is encoded by the TPP1 gene. TPP1 should not be confused with the TPP1 shelterin protein which protects telomeres and is encoded by the ACD gene. Mutations in the TPP1 gene leads to late infantile neuronal ceroid lipofuscinosis.

<span class="mw-page-title-main">HtrA serine peptidase 2</span> Enzyme found in humans

Serine protease HTRA2, mitochondrial is an enzyme that in humans is encoded by the HTRA2 gene. This protein is involved in caspase-dependent apoptosis and in Parkinson's disease.

<span class="mw-page-title-main">PRSS8</span> Protein-coding gene in the species Homo sapiens

Prostasin is a protein that in humans is encoded by the PRSS8 gene.

<span class="mw-page-title-main">DPP9</span> Protein-coding gene in the species Homo sapiens

Dipeptidyl peptidase 9 is an enzyme that in humans is encoded by the DPP9 gene.

<span class="mw-page-title-main">Subtilase</span>

Subtilases are a family of subtilisin-like serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like in the trypsin serine proteases. The structure of proteins in this family shows that they have an alpha/beta fold containing a 7-stranded parallel beta sheet.

Pyroglutamyl-peptidase I (EC 3.4.19.3, also known as Pyrrolidonyl peptidase, is an enzyme found in bacteria, plants and animals.

Cerevisin is an enzyme. This enzyme catalyses the following chemical reaction

Lysyl endopeptidase is an enzyme. This enzyme catalyses the following chemical reaction

<span class="mw-page-title-main">Zingibain</span>

Zingibain, zingipain, or ginger protease is a cysteine protease enzyme found in ginger rhizomes. It catalyses the preferential cleavage of peptides with a proline residue at the P2 position. It has two distinct forms, ginger protease I (GP-I) and ginger protease II (GP-II).

Rhodotorulapepsin is an enzyme. This enzyme catalyses the following chemical reaction

Scytalidopepsin A (EC 3.4.23.31, Scytalidium aspartic proteinase A, Scytalidium lignicolum aspartic proteinase, Scytalidium lignicolum aspartic proteinase A-2, Scytalidium lignicolum aspartic proteinase A-I, Scytalidium lignicolum aspartic proteinase C, Scytalidium lignicolum carboxyl proteinase, Scytalidium lignicolum acid proteinase) is an enzyme. This enzyme catalyses the following chemical reaction

<span class="mw-page-title-main">Scytalidopepsin B</span>

Scytalidocarboxyl peptidase B, also known as Scytalidoglutamic peptidase and Scytalidopepsin B is a proteolytic enzyme. It was previously thought to be an aspartic protease, but determination of its molecular structure showed it to belong a novel group of proteases, glutamic protease.

Serralysin is an enzyme. This enzyme catalyses the following chemical reaction

Leucolysin is an enzyme. This enzyme catalyses the following chemical reaction

<span class="mw-page-title-main">Glutamic protease</span>

Glutamic proteases are a group of proteolytic enzymes containing a glutamic acid residue within the active site. This type of protease was first described in 2004 and became the sixth catalytic type of protease. Members of this group of protease had been previously assumed to be an aspartate protease, but structural determination showed it to belong to a novel protease family. The first structure of this group of protease was scytalidoglutamic peptidase, the active site of which contains a catalytic dyad, glutamic acid (E) and glutamine (Q), which give rise to the name eqolisin. This group of proteases are found primarily in pathogenic fungi affecting plant and human.

References

  1. "Family S53: Summary". MEROPS - the Peptidase Database.
  2. Oda K (January 2012). "New families of carboxyl peptidases: serine-carboxyl peptidases and glutamic peptidases". Journal of Biochemistry. 151 (1): 13–25. doi: 10.1093/jb/mvr129 . PMID   22016395.
  3. Oda K, Sugitani M, Fukuhara K, Murao S (March 1987). "Purification and properties of a pepstatin-insensitive carboxyl proteinase from a gram-negative bacterium". Biochimica et Biophysica Acta (BBA) - General Subjects. 923 (3): 463–469. doi:10.1016/0304-4165(87)90055-9. PMID   3548827.
  4. Oda K, Nakatani H, Dunn BM (April 1992). "Substrate specificity and kinetic properties of pepstatin-insensitive carboxyl proteinase from Pseudomonas sp. No. 101". Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology. 1120 (2): 208–214. doi:10.1016/0167-4838(92)90272-f. PMID   1562589.
  5. Wlodawer A, Li M, Dauter Z, Gustchina A, Uchida K, Oyama H, et al. (May 2001). "Carboxyl proteinase from Pseudomonas defines a novel family of subtilisin-like enzymes". Nature Structural Biology. 8 (5): 442–446. doi:10.1038/87610. PMID   11323721. S2CID   16793101.
  6. Wlodawer A, Li M, Gustchina A, Oyama H, Dunn BM, Oda K (2003). "Structural and enzymatic properties of the sedolisin family of serine-carboxyl peptidases". Acta Biochimica Polonica. 50 (1): 81–102. doi: 10.18388/abp.2003_3716 . PMID   12673349.
  7. Oda K, Nakazima T, Terashita T, Suzuki KI, Murao S (1987). "Purification and properties of an S-PI(pepstatin Ac)-insensitive carboxyl proteinase from a Xanthomonas sp. bacterium". Agric. Biol. Chem. 51 (11): 3073–3080. doi: 10.1271/bbb1961.51.3073 .
  8. Wlodawer A, Li M, Gustchina A, Oyama H, Dunn BM, Oda K (2003). "Structural and enzymatic properties of the sedolisin family of serine-carboxyl peptidases". Acta Biochimica Polonica. 50 (1): 81–102. doi: 10.18388/abp.2003_3716 . PMID   12673349.
  9. Henney HR, Tavana G (1982). "Purification and some properties of an intracellular acid (carboxyl) proteinase from differentiating haploid cells of Physarum flavicomum". Exp. Mycol. 6: 161–170. doi:10.1016/0147-5975(82)90090-1.
  10. Murakami-Murofushi K, Hiratsuka A, Ohta J (1984). "A novel acid protease from haploid amoebae of Physarum polycephalum, and its changes during mating and subsequent differentiation into diploid plasmodia". Cell Struct. Funct. 9 (3): 311–315. doi: 10.1247/csf.9.311 .
  11. North MJ, Whyte A (1984). "Purification and characterization of two acid proteinases from Dictyostelium discoideum". J. Gen. Microbiol. 130: 123–134. doi: 10.1099/00221287-130-1-123 .
  12. Wlodawer A, Li M, Gustchina A, Oyama H, Dunn BM, Oda K (2003). "Structural and enzymatic properties of the sedolisin family of serine-carboxyl peptidases". Acta Biochimica Polonica. 50 (1): 81–102. doi: 10.18388/abp.2003_3716 . PMID   12673349.
  13. Nishii W, Ueki T, Miyashita R, Kojima M, Kim YT, Sasaki N, et al. (February 2003). "Structural and enzymatic characterization of physarolisin (formerly physaropepsin) proves that it is a unique serine-carboxyl proteinase". Biochemical and Biophysical Research Communications. 301 (4): 1023–1029. doi:10.1016/s0006-291x(03)00083-4. PMID   12589815.
  14. Nishii W, Kuriyama H, Takahashi K (July 2003). "The Physarum polycephalum php gene encodes a unique cold-adapted serine-carboxyl peptidase, physarolisin II". FEBS Letters. 546 (2–3): 340–344. doi:10.1016/S0014-5793(03)00621-5. PMID   12832065. S2CID   19197020.